PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15566_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 205aa    MW: 22643.5 Da    PI: 8.8173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15566_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-20137186255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  RrC15566_p1 137 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDTAAFKLRG 186
                  59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.06E-35136196No hitNo description
PROSITE profilePS5103223.393137194IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-24137195IPR016177DNA-binding domain
SMARTSM003806.7E-39137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32137195IPR001471AP2/ERF domain
PfamPF008471.7E-14138186IPR001471AP2/ERF domain
PRINTSPR003671.4E-11138149IPR001471AP2/ERF domain
PRINTSPR003671.4E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDAAMNFNSS ITFQQQPDSF GGGGELMEAL LPFIKSVSDS SSASASAFIN PAASGFPLPT  60
FPGYYPEHYL SQPFSYGSDL QQTGSLIGLN NLSPSQIHQI QSQIHPLPPT RSNLSPEPLL  120
MKQPGVAYGA PPKPAKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAALAYDTA  180
AFKLRGDFAR LNFPNLRHHD GSHEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20136202470ATERF1
3gcc_A1e-20136202470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894141e-84AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592608.11e-123PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E42e-87RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A078CT781e-124A0A078CT78_BRANA; BnaC06g20590D protein
STRINGBra003659.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-59related to AP2 4